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Development of Complex Curricula for Molecular Bionics and Infobionics Programs within a consortial* framework**

Consortium leader

PETER PAZMANY CATHOLIC UNIVERSITY

Consortium members

SEMMELWEIS UNIVERSITY, DIALOG CAMPUS PUBLISHER

The Project has been realised with the support of the European Union and has been co-financed by the European Social Fund ***

**Molekuláris bionika és Infobionika Szakok tananyagának komplex fejlesztése konzorciumi keretben

***A projekt az Európai Unió támogatásával, az Európai Szociális Alap társfinanszírozásával valósul meg.

PETER PAZMANY CATHOLIC UNIVERSITY SEMMELWEIS

UNIVERSITY

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Organic and Biochemistry

Acidity and basicity of organic compounds:

donating and accepting proton and beyond

(Szerves és Biokémia )

(Szerves vegyületek aciditása, bázicitása: protont adni és kapni, s ezen túl)

semmelweis-egyetem.hu

Compiled by dr. Péter Mátyus

with contribution by dr. Gábor Krajsovszky

Formatted by dr.Balázs Balogh

(3)

Table of Contents

semmelweis-egyetem.hu

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

1. Brøensted and Lewis theory 4 – 4

2. Characterization of acidic strength 5 – 5

3. Weak and strong acids 6 – 8

4. Acidity trends 9 – 9

5. Basic strength 10 – 12

6. Proton sponges 13 – 13

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Acid-base theory I.

(summary)

- Brøensted theory:

acid: proton donor base: proton acceptor every acid has a conjugate base every base has a conjugate acid

- Lewis theory (1916)

acid: electron pair acceptor base: electron pair donor

A H

+

B A

+

B H

acid1 base2 base1 acid2

+

B A B A

BH3

+

(CH3)2N

+

N(H3C)3 BF3

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(5)

Acid-base theory II. (summary)

Thermodynamical parameters:

concentration of water ~ is constant

[ ][ ]

[ H H O O ][ ] HA A

K

2

- eq 3

=

+ (complete equilibrium constant)

+ HA + A

-

O

H

2

H

3

O

+

(pseudo equilibrium constant) characterization of acidic strength

[ ][ ]

[ ] HA A

K H

- a

=

+

Ka = Keq [H2O] pKa = - log Ka if: Keq = 1 Ka = [H2O] = 55.56 pKa = - log [H2O] = - 1.745

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(6)

Acid-base theory III. (summary)

Weak acids:

Strong acids:

Keq << 1, Ka << [H2O]

pKa >> - log [H2O]

pKa >> - 1.75

e.g., CH3COOH pKa 4.76 CH3CH2OH pKa 16 Keq << 1, Ka >> [H2O]

pKa << - log [H2O]

pKa << - 1.75

e.g., HCl pKa -7

Cl CCOOH pK 16

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(7)

R C O O

H Na O H R C O

O

Na H O H

Stronger acid pKa = 3-5

Stronger base Weaker base Weaker acid pKa = 15.7

C O

O H Na O H C O

O

H O H Na

Insoluble in water Soluble in water

R NH2 H O H H

Cl R N H

H H

Cl O H

H Stronger base Stronger acid

pKa = 1.74

Weaker acid pKa = 9-10

Weaker base

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(8)

(CH3)3CO H H tert-butyl (CH3)3CO H2 alcohol

Stronger acid pKa = 18

Stronger base (from NaH)

Weaker base Weaker acid pKa = 35 CH3CH2O H H ethyl alcohol CH3CH2O H2 Stronger acid

pKa = 16

Stronger base (from NaH)

Weaker base Weaker acid pKa = 35

R C C H NH2

Stronger acid pKa = 25

Stronger base (from NaNH2)

liquid

NH3 R C C NH3

Weaker base Weaker acid pKa = 38

H C C H NH2

Stronger acid pKa = 25

Stronger base (from NaNH2)

liquid

NH3 H C C NH3

Weaker base Weaker acid pKa = 38

H O H NH2 H O NH3

Stronger acid pKa = 15.7

Stronger base Weaker base Weaker acid pKa = 38

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(9)

Acid-base theory IV. (summary)

Trends:

Acidity

1. C-H < N-H < O-H < F-H

electronegativity 2. HF < HCl < HBr < Hi

3. ClCH2COOH < Cl2CHCOOH

inductive effect 4. ClCH2COOH < FCH2COOH

5. R-CH2OH < R-COOH resonance effect 6. sp3 < sp2 < sp hybridisation

Organic compounds

RH < ROH < RSH < ArOH < ArSH < RCOOH < RSO2OH

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(10)

Acid-base theory V. (summary)

Basic strength

pKa also defines the strength of the conjugate base of an acid.

The higher the pKa value of the conjugate acid is, the stronger the base is.

Malodinitrile is a stronger acid, than methanol;

methoxide anion is a stronger base, than the conjugated basis of malodinitrile

H+

+

N C CH2 C N N C CH2 C N

H+

+

C

H3 O- C

H3 OH

pKa ≈ 11

pKa ~ 15

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(11)

An acid A reacts with any base, the conjugate acid of which is weaker than the acid A.

Acid-base theory VI. (summary)

E.g.,

+ N C CH

2

C N

N C CH

2

C N

+

C

H

3

O

-

C

H

3

OH

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(12)

Acid-base theory VII. (summary)

Extreme values (records)

- Superacids (Prof. George Oláh) Brønsted + Lewis acids

H0 scale for pH-s < 0 [-H0]

HF + SbF5 -H0 ~ 20-30 - The weakest acids: R-H (alkanes)

E.g.,

H+

+

C

H3 CH2- CH2 H

C H3

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

(13)

Proton sponges

2

bis(dimethylamino)-fluorene a very strong base

Unfavorable interaction between the non-bonding electron pairs of the nitrogens is relieved on protonation.

Protonation: the disadvantageous interaction is relieved, and moreover, there is a stabilising H-bond.

Results

3

N,N-dimethylaniline

pKa (conj. acid): 2 >10 3 = ca. 5

Organic and Biochemistry: Acidity and Basicity of Organic Compounds

semmelweis-egyetem.hu

2

N C H3

C H3

N

CH3 CH3

N+ C H3

C H3

N

CH3 CH3

H N

C

H3 CH3

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1. Mark electronic effect of the heteroatom in the following compounds.

Explain A/ acidity B/ basicity of these compounds according to the electronic effects.

H3C CH2 CH2 OH H3C CH CH OH

A/

a) b)

a) H3C CH2 CH2 NH2 H3C CH CH NH2 b)

B/

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2. Make increasing acidity order of the following compounds (in aqueous solutions):

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3. Make increasing basicity order of the following compounds (in aqueous solutions):

CH

3

CH

2

NH

2

NH H

3

C

H

3

C

N H

3

C H

3

C H

3

C

I. II. III. IV.

N CH

3

CH

3

H

3

C CH

3

HO

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4. Suggest reaction conditions for the following reactions:

A/ alkylation of malononitrile by methyl iodide;

B/ preparation of sodium methanolate from methanol.

A/

B/

N C CH

2

C N alkilezés

I.

CH

3

OH II.

alkylation

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