Development of Complex Curricula for Molecular Bionics and Infobionics Programs within a consortial* framework**
Consortium leader
PETER PAZMANY CATHOLIC UNIVERSITY
Consortium members
SEMMELWEIS UNIVERSITY, DIALOG CAMPUS PUBLISHER
The Project has been realised with the support of the European Union and has been co-financed by the European Social Fund ***
PETER PAZMANY CATHOLIC UNIVERSITY SEMMELWEIS
UNIVERSITY
BIOCHEMISTRY
CATABOLISM OF CARBOHYDRATES
www.se.hu
(BIOKÉMIA )
(A SZÉNHIDRÁTOK LEBONTÁSA )
TRETTER LÁSZLÓ
http://semmelweis-egyetem.hu/
Biochemistry: Catabolism of carbohydrates
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CatabolismDEF: Part of intermediary metabolism dealing with the energy-yielding degradation of nutrient molecules
Antonym of catabolism: anabolism Examples for catabolic processes
Decomposition of glucose to pyruvate or lactate called:
glycolysis
Decomposition of fatty acids to acetyl-CoA called: beta oxidation Decomposition of glycogen to glucose: called glycogenolysis Decomposition of acetyl-CoA to carbon dioxide + water called:
citric acid cycle
Biochemistry: Catabolism of carbohydrates
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CLASSIFICATION of CARBOHYDRATES
MonosacharidesDEF: those carbohydrates that cannot be hydrolyzed into a simpler form
subdivision: trioses, tetroses, pentoses, hexoses, heptoses depending upon the number of carbon atom
subdivision: aldoses or ketoses depending upon the presence of of aldehyde or ketone group
DisaccharidesDEF: hydrolysis of disaccharides yields 2 molecules of monosaccharides
OligosaccharidesDEF: Hydrolysis yields 3-6 monosaccharide units PolysaccharidesDEF: Hydrolysis yields more than 6 monosaccharide
Biochemistry: Catabolism of carbohydrates
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Examples for monosaccharides
Aldoses Ketoses Trioses (C3H6O3) Glycerose
Synonym:
Glycer- aldehyde
Dihydroxy- acetone
Tetroses (C4H8O4) Erythrose Erythrulose Pentoses (C5H10O5) Ribose Ribulose Hexoses (C6H12O6) Glucose Fructose
Biochemistry: Catabolism of carbohydrates
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Table of contents:
Glycolysis, the anaerobic decomposition of glucose Catabolism of non-glucose carbohydrates
Regulation of carbohydrate catabolism
Biochemistry: Catabolism of carbohydrates
Glycolysiswww.se.hu http://semmelweis-egyetem.hu/
Glycolysis -reactions Learning objectives:
Carbohydrates are major energy giving substrates for a living organism
Glycolysis an universal pathway to decompose glucose even in the absence of oxygen
At the end of the presentation students will be able:
1. To reproduce the most important steps of glycolysis
2. To understand the formation of ATP in the absence of oxygen 3. To demonstrate important principles of thermodinamics
using examples taken from glycolysis
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GlycolysisDEF
-Anaerobic degradation of glucose to lactate or
-Anaerobic degradation of glucose to pyruvate – a preparatory pathway for the aerobic metabolism of glucose
-Can occur in every cell
-Energy yielding pathway (2 ATP/glucose)
In the absence of oxygen every cell would perform glycolysis and the end-product will be lactate
thus
glycolysis is the most universal metabolic pathway.
Biochemistry: Catabolism of carbohydrates
Glycolysis
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Glycolysis -reactions Overview of glycolysis Glucose
C6
Hexose phosphates (C6)
Triose phosphate Triose phosphate NADH+H+ NAD+
CO2 H2O ATP
ATP formation
Biochemistry: Catabolism of carbohydrates
Glycolysis
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Overview of glycolysis
In the absence of oxygen or mitochondria
2 NAD+ 2 NADH+H+
In the presence of oxygen and mitochondria
Glycolysis -reactions
Biochemistry: Catabolism of carbohydrates
Glycolysis
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Glycolysis -reactions Preparatory phase of glycolysis
2 ATP invested and
Hexose chain is converted into triose phosphates
Biochemistry: Catabolism of carbohydrates
Glycolysis
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ATP requiring reactions of glycolysis
Hexokinase Glucokinase
Phosphofructokinase-1
ΔG’o= -16.7 kJ/mol irreversible
ΔG’o= -14.2 kJ/mol Irreversible
Rate limiting step of glycolysis
Important reactions of the preparatory phase
Biochemistry: Catabolism of carbohydrates
Glycolysis
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Important reactions of the preparatory phase
Hexokinase and glucokinase are isoenzymes
IsoenzymesDEF: Enzymes catalyzing the same reaction But differ:
In amino acid sequence Vmax, and/or KM
in regulation
Hexokinases are localized in the peripheral tissues Glucokinase is localized in the liver
Hexokinases show high affinity for glucose Glucokinase show low affinity for glucose Their regulation is different
Biochemistry: Catabolism of carbohydrates
Glycolysis
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Important reactions of the payoff phase
ΔG’o= 6.3 kJ/mol reversible
ΔG’o= -18.5 kJ/mol reversible
ΔG’o= -31.4 kJ/mol irreversible
Inorganic phosphate incorporation NADH formation
High energy acyl-phosphate group formation on the 1stC atom
The acyl-phosphate group is transferred to ADP Substrate level phosphorylation
From the high energy enol-phosphate bond the phosphoryl group is transferred to ADP
Substrate level phosphorylation
Biochemistry: Catabolism of carbohydrates
Glycolysis
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Energetic balance of glycolysis
Preparatory phase 2 ATP invested - 2 Payoff phase 2x2 ATP produced
(1 hexose 2 triose) +4
Summary Net ATP production +2
Substrate level phosphorylationDEF: Formation of ATP by phosphoryl group transfer from a compound having high energy bound
Examples for substrate level phosphorylation:
in glycolysis: phosphoglycerate kinase reaction pyruvate kinase reaction
Biochemistry: Catabolism of carbohydrates
Glycolysis
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Glycolysis - Summary
Glycolysis – the most important decomposition pathway of the most important carbohydrate
- glycolysis produces energy even in the absence of oxygen - every higher eukaryotic cells are able to perform glycolysis - 2 mol of ATP produced from 1 mol of glucose
- in the presence of oxygen and mitochondria glycolysis is continued in the citric acid cycle
- glycolysis has reversible and irreversible steps
- the irreversible reactions of glycolysis are catalyzed by hexokinase (glucokinase in liver), phosphofructokinase
Biochemistry: Catabolism of carbohydrates
Glycolysis
Biochemistry: Catabolism of carbohydrates C
atabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Catabolism of non-glucose carbohydrates
Introduction
Carbohydrates are major energy giving substrates for living organism Besides glucose other carbohydrates (e.g. fructose and galactose) are
also taken up by the organism, which sugars can be catabolized or can participate in the synthesis of other molecules
Glycogen is a special storage form of glucose with a function in the maintenance of blood sugar level and in the energy supply of the muscle cells.
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Learning objectives
At the end of the presentation students will be able:
To understand the pathways used by individual carbohydrates to join to the mainstream of the metabolism
To understand that consumption of different carbohydrates could change physiological pathways and could have pathological
consequences as well.
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Fructose metabolism
Availability of fructose: Natural sources: fruit juices, honey, disaccharide sucrose Food industry: High Fructose Corn Syrup
Importance: Mainly changed to glucose in the liver and used in the body
Pathological significance: hereditary fructose intolerance (fructose accumulation plus hypoglycemia), obesity
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Entry of fructose into glycolysis
1. In liver – major organ of fructose catabolism
Glycolysis, gluconeogenesis Important: fructose catabolism in the liver bypasses phosphofructokinase-1!
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Entry of fructose into glycolysis
2. In skeletal muscle – less important in fructose catabolism Fructose
Fructose 6-phosphate ATP
ADP
Hexokinase
Glycolysis
Hexokinase - not entirely specific for glucose - converts fructose to Fr 6-P
at low [Glucose]
at high [Fructose]
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Glycolysis, gluconeogenesis
Pathological aspects of fructose metabolism
X
1) Hereditary fructose intolerance Aldolase B deficiency
[fr 1-P] increased
Symptom: hypoglycemia
Why? See:regulation of carbohydrate breakdown
2) High fructose consumption
- Susceptibility to obesity,hyperlipidemia hyperlipidemiaDEF: increased concentration of lipids in the blood
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Galactose metabolism
Availability of galactose: from milk sugar: lactose. Intestinal hydrolysis of lactose results in formation of galactose+glucose
Galactose is metabolized mainly in the liver, can be converted to glucose Importance: needed for synthesis of glycoproteins, glycolipids,
lactose (in lactating women) Pathological significance: galactosemia
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Galactose metabolism
Galactose
galactokinase Galactose 1-phosphate
UDP-Glc-Gal 1-P uridyltransferse
Glucose 1-phosphate
phosphoglucomutase Glucose 6-phosphate
ATP ADP
Glucose 1-P
UDP-Glc
pyrophosphorylase UDP-glucose
UDP-galactose
UTP PPi
UDP-gal epimerease
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
[Galactose]
galactokinase [Galactose 1-phosphate]
UDP-Glc-Gal 1-P uridyltransferse
Glucose 1-phosphate
phosphoglucomutase
ATP ADP
Glucose 1-P
UDP-Glc
pyrophosphorylase UDP-glucose
UDP-galactose
UTP PPi
UDP-gal epimerease
Pathological aspects of galactose metabolism
X
Galactosemia:
lack of UDP-Glc-Gal 1-P uridyltransferse
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Glycogen metabolism
Glycogen: the storage form of glucose in the body forms granules in the cytosol
many cells contain glycogen
the most important organs for storage: liver, skeletal muscle function of liver glycogen: maintenance of blood sugar level function of muscle glycogen: energetic support of contraction Structure: highly branched structure
chains: alpha [1-4] glucosidic linkage branches: alpha [1-6] glucosidic linkage
protein glycogenin is localized in the core of glycogen glycogenin is required for the synthesis
molecular mass: in the order of millions
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrates
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The structure of glycogen
1
6
6 4 1
4 1 4 1
1 4 1
Glycogenin
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
GlycogenolysisDEF: Intracellular decomposition of glycogen Resulting glucose in the liver and kidney cortex
Resulting glucose 6-P in the muscle Synonym: glycogen breakdown
Antonym: glycogenesis or glycogen synthesis
The purpose of glycogenolysis in liver (and to a smaller extent in kidney cortex): maintenance of blood sugar level.
Blood sugar level should be kept constant, because there are cells and tissues which gain energy exclusively from glucose
The purpose of glycogenolysis in muscle cells: to support the energy requirement of contraction.
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
The fate of glycogen-derived glucose after breakdown
In liver: release to the bloodstream
In muscle: glycolysis then citric acid cycle In muscle in shortage of oxygen:
glycolysis ending with lactate
production phosphoglucomutase
Lactate dehydrogenase
Pi
Glycogen
glycogen phosphorylase Glucose 1-P
Glucose 6-P
Pyruvate
PDH complex Glycolysis glucose 6-Pase
Glucose Lactate
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Steps of glycogen breakdown 1
Glycogen
Glycogen phosphorylase
Debranching enzyme alpha (1→4) →alpha (1→4)
transferase activity
Debranching enzyme Amylo (1→6)-glucosidase
activity Pi P
gl 1-P
gl H2O
Debranching enzyme has two catalytic activities Products of catabolism: shorter glycogen
glucose 1-P
glucose (captured by hexo- or glucokinase)
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrates
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Steps of glycogen breakdown 2
phosphoglucomutase glucose 6-phosphatase H2O Pi
phosphohexose isomerase
ER in liver
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Pathological aspects of glycogen breakdown
Glycogen storage diseasesDEF:inherited disorders characterized by abnormal quantity or type of glycogen in tissues
Examples: Name Deficiency Consequences
Von Gierke’s disease Lack of glucose 6-
phosphatase in liver and kidney
Hypoglycemia, hyperlipemia
Cori’s disease Lack of debranching enzyme
Accumulation of abnormally branched glycogen
Mc Ardle’s disesase Lack of glycogen phosphorylase in the skeletal muscle
Diminished tolerance to exercise
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Summary:
Catabolism of non-glucose carbohydrates were discussed
Glycogen, fructose and galactose catabolism follows individual pathways All of the individual decomposition pathways will join to glycolysis, so
the complete breakdown of these saccharides will be similar to that of glucose.
Biochemistry: Catabolism of carbohydrates
Catabolism of non-glucose carbohydrateswww.se.hu http://semmelweis-egyetem.hu/
Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Learning objectivesAt the end of the presentation students will be able:
To understand the adaptation of carbohydrate catabolic
pathways to the current requirement of the organism and the cell.
To understand the concept that metabolic pathway can be regulated by different ways: the most important ones are:
- Regulation by changing the gene expression
- Regulation by reversible covalent modification (e.g.
phosphorylation/dephosphorylation of the key enzymes - Regulation by allosteric effectors
To understand that only a few of the enzymes are regulated in the metabolic pathways, usually the rate-limiting ones and those which catalyze irreversible reactions
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Multilevel regulation of glycolytic enzymes
Gene expression Covalent modification Allosteric Enzyme Inducer repressor phosphorylat
ion
dephosphory
lation activator inhibitor
Hexokinase Gluc 6-P
Glucokinase insulin
Glucagon (cAMP) Starvation
Fructose 1-P
(through glucokinase
regulatory protein)
Fructose 6-P
through glucokinase regulatory protein)
Phosphofruct
okinase-1 insulin starvation Fructose 2,6-P2
AMP
ATP, citrate, fatty acids Pyruvate
insulin
Glucagon (cAMP)
cAMP,
Ca-CaM insulin
Fructose 1,6-P ATP, alanine
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Regulation of glucokinase(liver)
Inative in the nucleus
The regulation of glucokinase explains
hypoglycemia detected in fructose intolerance.
Accumulation of fructose 1-P suspends the regulatory protein-mediated inhibition of
glucokinase, thus glycolysis will be accelerated
Fructose 6-P mediated inhibition of glucokinase represents a negative fee back mechanism
Accumulation In fructose intolerance
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Regulation of phosphofructokinase-1 in liver Insulin stimulates glycolysisInsulin +
Phosphorylated: inactive Dephosphorylated:
active
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Phosphorylated: inactive
Glucagon +
X X
Regulation of phosphofructokinase-1 in liver Glucagon inhibits glycolysis
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Structure of 6-phosphofructo 2-kinase/fructose 2,6-bisphosphatase enzyme Tandem enzyme: one polypeptide chain – two catalytic activities
Heart specific enzyme: Phosphorylation (PKA) of the phosphatase domain inactivates phosphatase activity
Kinase activity will be dominant Glycolysis activated
Liver specific enzyme: Phosphorylation (PKA) near the kinase domain inactivates kinase activity Phosphates activity will be dominant.
Glycolysis is inactivated
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Allosteric regulation of glycolysis Meaning of regulators
High [gluc 6-P] indicates that hexokinase activity is too high
High [AMP] – indicates low energy charge of the cell (local regulator)
High [ATP] – indicates high energy charge of the cell
High [citrate] indicates the overflow of fatty acid synthesis precursors from the mitochondria to the cytosol
Fructose 2,6-P2the most important regulator of the rate limiting step of glycolysis. The level of Fr 2,6-P2reflects hormonal changes.
In liver insulin elevates [Fr 2,6-P2], glycolysis is stimulated Glucagon decreases [Fr 2,6-P2], glycolysis is inhibited Adrenalin decreases [Fr 2,6-P2], glycolysis is inhibited BUT!
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Regulation of glycogen breakdown
cAMP level is elevated by some hormones
cAMP activated protein kinase A phosphorylates and activates phosphorylase kinase
Activated phosphorylase kinase phosphorylates and activates glycogen phosphorylase
Activated glycogen phosphorylase catalyzes glycogen breakdown
Those hormones which decrease cAMP level has opposite effect on glycogen breakdown
Calcium activates phosphorylase kinase.
Activated phosphorylase kinase phosphorylates and activates glycogen phosphorylase, which catalyzes glycogen breakdown
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Summary:
Carbohydrates are important sources of energy for the organisms.
Glycolysis is a fundamental energy yielding metabolic pathway in every cell.
The rate of glycolysis is strictly regulated by various mechanisms Changes of the gene expression of the most important enzymes are regulated by hormones and by the nutrition.
Reversible chemical modification of the enzymes
(phosphorylation/dephosphorylation) usually reflects hormonal influence.
The level of allosteric modificators might reflect the actual changes in the local intracellular environment, but could be changed by hormonal effects as well (e.g. [fruc 2,6-P2] is dependent upon hormonal status).
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Biochemistry: Catabolism of carbohydrates
Regulation of carbohydrate catabolism
Recommended literature
Orvosi Biokémia (Ed. Ádám Veronika)
Biochemistry: Catabolism of carbohydrates
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Questions:
Describe the regulation of fructose catabolism, compare it with the regulation of glucose catabolism
Which are the irreversible steps of glycolysis?
Which enzyme reaction is the rate-limiting enzyme in the glycolysis?
How many ATP can be produced, if glycolysis starts from previously synthesized glycogen and ends up with lactate formation?
What is the consequence of having different PFK2
isoenzymes in the heart and liver considering the effect of adrenaline on glycolysis?
Biochemistry: Catabolism of carbohydrates
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Questions:
Which of the following statements are true for the PFK1?
1. The reaction catalized by the enzyme is irreversible in vivo 2. The activity of the enzyme can be inhibited by ATP
3. Its function is influenced by the ATP/ADP ratio 4. It is the fastest enzyme of the glycolysis 5. It works even in the absence of ATP
A:2,3,5 B:1,2,3 C:1,2,3,4 D:2,3,4,5 E:1,3,4,5
Which of the following statements are true for the fructose metabolism?
1. Fructose is phosphorylated by hexokinase in the liver
2. Fructose metabolism does require a specific aldolase for Fr 1-P 3. Fructose can be converted to either pyruvate or glucose
4. Fructose consumption can not elevate the blood sugar level 5. Fructose catabolism in the liver bypasses phosphofructokinase